CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.673 rna-evm.model.Chr1.673 Chr1 20691070 20810773 PREDICTED: Neuropilin-1 nan K17253
gene-evm.TU.Chr1.674 rna-evm.model.Chr1.674 Chr1 20830338 20838469 PREDICTED: cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A GO:0004114;GO:0005515;GO:0007165;GO:0008081 K18438
gene-evm.TU.Chr1.675 rna-evm.model.Chr1.675 Chr1 20840412 20847751 PREDICTED: Cell division cycle protein 20 homolog GO:0005515;GO:0010997;GO:0097027;GO:1904668 K03363
gene-evm.TU.Chr1.676 rna-evm.model.Chr1.676 Chr1 20848952 20875668 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.677 rna-evm.model.Chr1.677 Chr1 20878996 20885621 PREDICTED: Major egg antigen nan K09542
gene-evm.TU.Chr1.678 rna-evm.model.Chr1.678 Chr1 20888469 20897391 PREDICTED: Alpha-N-acetylgalactosaminidase GO:0004553;GO:0005975 K01204
gene-evm.TU.Chr1.679 rna-evm.model.Chr1.679 Chr1 20900130 20907635 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr1.680 rna-evm.model.Chr1.680 Chr1 20914740 20923420 PREDICTED: Alpha-N-acetylgalactosaminidase GO:0004553;GO:0005975 K01204
gene-evm.TU.Chr1.681 rna-evm.model.Chr1.681 Chr1 20924741 20927054 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270;GO:0046872 K12026
gene-evm.TU.Chr1.682 rna-evm.model.Chr1.682 Chr1 20944256 20945497 PREDICTED: Mucin-12 nan K24296

For more detailed data, you can explore the Download section to access the full dataset.