CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.662 rna-evm.model.Chr1.662 Chr1 20401444 20434564 PREDICTED: Nuclear pore complex protein Nup98-Nup96 GO:0005643;GO:0006913;GO:0017056 K14297
gene-evm.TU.Chr1.663 rna-evm.model.Chr1.663 Chr1 20438940 20440246 PREDICTED: Exosome complex component RRP42 nan K12589
gene-evm.TU.Chr1.664 rna-evm.model.Chr1.664 Chr1 20452074 20456183 PREDICTED: Cyclin-G1 GO:0051726 K10145
gene-evm.TU.Chr1.665 rna-evm.model.Chr1.665 Chr1 20456742 20467235 PREDICTED: Cyclin-I GO:0051726 K10146
gene-evm.TU.Chr1.666 rna-evm.model.Chr1.666 Chr1 20473023 20476165 PREDICTED: Temptin nan nan
gene-evm.TU.Chr1.669 rna-evm.model.Chr1.669 Chr1 20501936 20518398 PREDICTED: Ovarian abundant message protein GO:0008083;GO:0016020 K05449
gene-evm.TU.Chr1.67 rna-evm.model.Chr1.67 Chr1 2102866 2122672 PREDICTED: Scavenger receptor cysteine-rich type 1 protein M130 GO:0005044;GO:0005515;GO:0016020 K09624
gene-evm.TU.Chr1.670 rna-evm.model.Chr1.670 Chr1 20521105 20525940 PREDICTED: vascular endothelial growth factor C/D GO:0008083;GO:0016020 K05449
gene-evm.TU.Chr1.671 rna-evm.model.Chr1.671 Chr1 20534915 20551546 PREDICTED: Mediator of RNA polymerase II transcription subunit 16 GO:0016592 K15159
gene-evm.TU.Chr1.672 rna-evm.model.Chr1.672 Chr1 20556453 20624809 PREDICTED: Putative oxidoreductase GLYR1 GO:0050661;GO:0051287 K18121

For more detailed data, you can explore the Download section to access the full dataset.