CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.653 rna-evm.model.Chr1.653 Chr1 20074455 20076837 PREDICTED: NLR family CARD domain-containing protein 3 nan nan
gene-evm.TU.Chr1.654 rna-evm.model.Chr1.654 Chr1 20081747 20167596 PREDICTED: Sodium- and chloride-dependent glycine transporter 2 GO:0016020 K05038
gene-evm.TU.Chr1.655 rna-evm.model.Chr1.655 Chr1 20214261 20220963 uncharacterized protein nan K23718
gene-evm.TU.Chr1.656 rna-evm.model.Chr1.656 Chr1 20249890 20250243 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr1.657 rna-evm.model.Chr1.657 Chr1 20269176 20332625 PREDICTED: Nuclear pore complex protein Nup98-Nup96 GO:0005643;GO:0017056 K14297
gene-evm.TU.Chr1.658 rna-evm.model.Chr1.658 Chr1 20332833 20335754 PREDICTED: Uncharacterized protein KIAA1958 homolog nan K24675
gene-evm.TU.Chr1.659 rna-evm.model.Chr1.659 Chr1 20336282 20339361 PREDICTED: Stress response protein nst1 nan K11424
gene-evm.TU.Chr1.66 rna-evm.model.Chr1.66 Chr1 2091056 2100986 PREDICTED: Cubilin GO:0005515 K14616
gene-evm.TU.Chr1.660 rna-evm.model.Chr1.660 Chr1 20356815 20379280 PREDICTED: Probable serine/threonine-protein kinase roco4 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr1.661 rna-evm.model.Chr1.661 Chr1 20390071 20390804 PREDICTED: Protein GVQW3 nan K11433

For more detailed data, you can explore the Download section to access the full dataset.