CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.643 rna-evm.model.Chr1.643 Chr1 19741747 19754098 PREDICTED: Replicase polyprotein 1a nan K24254
gene-evm.TU.Chr1.644 rna-evm.model.Chr1.644 Chr1 19783128 19802977 PREDICTED: Notch 2 nan K24068
gene-evm.TU.Chr1.645 rna-evm.model.Chr1.645 Chr1 19837483 19873725 PREDICTED: Carbohydrate sulfotransferase 15 GO:0008146 K08106
gene-evm.TU.Chr1.646 rna-evm.model.Chr1.646 Chr1 19882283 19883932 uncharacterized protein nan K19012
gene-evm.TU.Chr1.647 rna-evm.model.Chr1.647 Chr1 19898174 19905680 PREDICTED: Fatty acid hydroxylase domain-containing protein 2 GO:0005506;GO:0008610;GO:0016491;GO:0055114 K22282
gene-evm.TU.Chr1.648 rna-evm.model.Chr1.648 Chr1 19912250 19979342 PREDICTED: Protein mesh GO:0007160 K23820
gene-evm.TU.Chr1.649 rna-evm.model.Chr1.649 Chr1 20003034 20013267 PREDICTED: peripheral myelin protein 22 GO:0016020 K24190
gene-evm.TU.Chr1.65 rna-evm.model.Chr1.65 Chr1 2065683 2070926 PREDICTED: Coagulation factor XI GO:0004252;GO:0006508 K09625
gene-evm.TU.Chr1.650 rna-evm.model.Chr1.650 Chr1 20034474 20045983 uncharacterized protein nan nan
gene-evm.TU.Chr1.652 rna-evm.model.Chr1.652 Chr1 20073711 20074415 PREDICTED: tudor domain-containing protein 1/4/6/7 nan K08885

For more detailed data, you can explore the Download section to access the full dataset.