CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.632 rna-evm.model.Chr1.632 Chr1 19490605 19505144 PREDICTED: E-selectin nan K06496
gene-evm.TU.Chr1.633 rna-evm.model.Chr1.633 Chr1 19506020 19534367 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0003677;GO:0006310;GO:0015074 K24469
gene-evm.TU.Chr1.634 rna-evm.model.Chr1.634 Chr1 19537640 19540438 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr1.635 rna-evm.model.Chr1.635 Chr1 19541274 19560192 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr1.636 rna-evm.model.Chr1.636 Chr1 19573538 19574665 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr1.637 rna-evm.model.Chr1.637 Chr1 19588381 19688790 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr1.638 rna-evm.model.Chr1.638 Chr1 19691922 19695587 PREDICTED: Notch 2 nan nan
gene-evm.TU.Chr1.639 rna-evm.model.Chr1.639 Chr1 19696428 19697037 uncharacterized protein nan nan
gene-evm.TU.Chr1.64 rna-evm.model.Chr1.64 Chr1 2056378 2064083 PREDICTED: myosin heavy chain GO:0005741;GO:0008270;GO:0035694 K22257
gene-evm.TU.Chr1.640 rna-evm.model.Chr1.640 Chr1 19702930 19712321 PREDICTED: Notch 2 nan K12560

For more detailed data, you can explore the Download section to access the full dataset.