CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.62 rna-evm.model.Chr1.62 Chr1 2049942 2051040 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K05742
gene-evm.TU.Chr1.622 rna-evm.model.Chr1.622 Chr1 19241323 19265082 PREDICTED: Leucine-rich repeat-containing protein 74A GO:0005509;GO:0005515 K08727
gene-evm.TU.Chr1.623 rna-evm.model.Chr1.623 Chr1 19273891 19276780 PREDICTED: Paternally-expressed gene 3 protein nan K06817
gene-evm.TU.Chr1.624 rna-evm.model.Chr1.624 Chr1 19277166 19283616 PREDICTED: prion-like-(Q/N-rich) domain-bearing protein 25 nan K11244
gene-evm.TU.Chr1.625 rna-evm.model.Chr1.625 Chr1 19284560 19286889 PREDICTED: collagen alpha-1(I) chain-like nan K12741
gene-evm.TU.Chr1.627 rna-evm.model.Chr1.627 Chr1 19323162 19325368 PREDICTED: DUF111 family protein nan K06078
gene-evm.TU.Chr1.628 rna-evm.model.Chr1.628 Chr1 19334755 19339935 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.629 rna-evm.model.Chr1.629 Chr1 19359309 19391799 PREDICTED: Multiple epidermal growth factor-like domains protein 10 GO:0004725;GO:0005509;GO:0006470 K24068
gene-evm.TU.Chr1.63 rna-evm.model.Chr1.63 Chr1 2051333 2055125 PREDICTED: Protein GVQW3 nan K07499
gene-evm.TU.Chr1.631 rna-evm.model.Chr1.631 Chr1 19482116 19483757 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026

For more detailed data, you can explore the Download section to access the full dataset.