CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.61 rna-evm.model.Chr1.61 Chr1 2025653 2034174 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K11499
gene-evm.TU.Chr1.611 rna-evm.model.Chr1.611 Chr1 18825885 18839313 PREDICTED: Heart- and neural crest derivatives-expressed protein 2 GO:0046983 K18486
gene-evm.TU.Chr1.612 rna-evm.model.Chr1.612 Chr1 18843404 18856519 PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase GO:0000287;GO:0008897 K06133
gene-evm.TU.Chr1.613 rna-evm.model.Chr1.613 Chr1 18860918 18893812 PREDICTED: Transcriptional regulator ATRX GO:0005524 K10779
gene-evm.TU.Chr1.614 rna-evm.model.Chr1.614 Chr1 18896182 18919009 PREDICTED: 97 kDa heat shock protein nan K09485
gene-evm.TU.Chr1.615 rna-evm.model.Chr1.615 Chr1 18928906 18932793 PREDICTED: Short coiled-coil protein A nan K20316
gene-evm.TU.Chr1.616 rna-evm.model.Chr1.616 Chr1 18933075 19010236 PREDICTED: FERM and PDZ domain-containing protein 4 GO:0005515;GO:0005856;GO:0007165 K23956
gene-evm.TU.Chr1.617 rna-evm.model.Chr1.617 Chr1 19017841 19026851 PREDICTED: Leucine-rich repeat-containing protein 74B GO:0005509;GO:0005515 K16634
gene-evm.TU.Chr1.618 rna-evm.model.Chr1.618 Chr1 19116703 19128330 PREDICTED: Patched domain-containing protein 3 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K24682
gene-evm.TU.Chr1.619 rna-evm.model.Chr1.619 Chr1 19129909 19139448 PREDICTED: Polyketide synthase-nonribosomal peptide synthetase nan K13614

For more detailed data, you can explore the Download section to access the full dataset.