CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.599 rna-evm.model.Chr1.599 Chr1 18606877 18608421 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr1.60 rna-evm.model.Chr1.60 Chr1 2014783 2021342 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.600 rna-evm.model.Chr1.600 Chr1 18628719 18632196 uncharacterized protein nan nan
gene-evm.TU.Chr1.601 rna-evm.model.Chr1.601 Chr1 18634642 18634968 uncharacterized protein nan K24236
gene-evm.TU.Chr1.603 rna-evm.model.Chr1.603 Chr1 18671081 18698682 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 38 GO:0016579;GO:0004843 K11854
gene-evm.TU.Chr1.604 rna-evm.model.Chr1.604 Chr1 18703486 18722031 PREDICTED: Caseinolytic peptidase B protein homolog GO:0005515;GO:0005524 K03695
gene-evm.TU.Chr1.605 rna-evm.model.Chr1.605 Chr1 18722227 18728461 PREDICTED: Glucosamine-6-phosphate isomerase 1 GO:0004342;GO:0005975;GO:0006044 K02564
gene-evm.TU.Chr1.606 rna-evm.model.Chr1.606 Chr1 18737542 18767157 PREDICTED: Arfaptin-1 GO:0019904 K20314
gene-evm.TU.Chr1.607 rna-evm.model.Chr1.607 Chr1 18769339 18771305 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim10B nan K17779
gene-evm.TU.Chr1.609 rna-evm.model.Chr1.609 Chr1 18779997 18784713 PREDICTED: Heart- and neural crest derivatives-expressed protein 2 GO:0046983 K18486

For more detailed data, you can explore the Download section to access the full dataset.