CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.588 rna-evm.model.Chr1.588 Chr1 18302415 18307408 uncharacterized protein GO:0008270 K04416
gene-evm.TU.Chr1.589 rna-evm.model.Chr1.589 Chr1 18311529 18340774 uncharacterized protein nan K07069
gene-evm.TU.Chr1.59 rna-evm.model.Chr1.59 Chr1 2006068 2010128 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.590 rna-evm.model.Chr1.590 Chr1 18352472 18361003 PREDICTED: COMM domain-containing protein 8 nan K22564
gene-evm.TU.Chr1.591 rna-evm.model.Chr1.591 Chr1 18364912 18405371 PREDICTED: Probable phospholipid-transporting ATPase VA GO:0000287;GO:0140326;GO:0005524;GO:0015914;GO:0016020 K01530
gene-evm.TU.Chr1.592 rna-evm.model.Chr1.592 Chr1 18421003 18425211 PREDICTED: Cytochrome b-c1 complex subunit 8 GO:0008121 K00418
gene-evm.TU.Chr1.593 rna-evm.model.Chr1.593 Chr1 18458466 18513085 PREDICTED: Phosphorylase b kinase regulatory subunit alpha, liver isoform GO:0005516;GO:0005977 K07190
gene-evm.TU.Chr1.594 rna-evm.model.Chr1.594 Chr1 18523247 18547276 PREDICTED: Probable protein S-acyltransferase 23 GO:0005515 K20032
gene-evm.TU.Chr1.597 rna-evm.model.Chr1.597 Chr1 18586451 18591154 PREDICTED: Torsin-1A (Fragment) GO:0005524;GO:0005635;GO:0005783 K22990
gene-evm.TU.Chr1.598 rna-evm.model.Chr1.598 Chr1 18591247 18605942 uncharacterized protein nan K04609

For more detailed data, you can explore the Download section to access the full dataset.