CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.575 rna-evm.model.Chr1.575 Chr1 17608542 17641071 PREDICTED: Putative methyltransferase NSUN7 GO:0008168 K15264
gene-evm.TU.Chr1.576 rna-evm.model.Chr1.576 Chr1 17664303 17686135 PREDICTED: Zonadhesin GO:0004222;GO:0006508 K08632
gene-evm.TU.Chr1.577 rna-evm.model.Chr1.577 Chr1 17778175 17780225 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676;GO:0003677 K11496
gene-evm.TU.Chr1.578 rna-evm.model.Chr1.578 Chr1 17929872 17941165 PREDICTED: Neuronal acetylcholine receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr1.579 rna-evm.model.Chr1.579 Chr1 17979732 17983112 PREDICTED: Neuronal acetylcholine receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04814
gene-evm.TU.Chr1.58 rna-evm.model.Chr1.58 Chr1 1984961 2001055 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.581 rna-evm.model.Chr1.581 Chr1 18007362 18019345 PREDICTED: Ribosome-binding protein 1 nan K20684
gene-evm.TU.Chr1.582 rna-evm.model.Chr1.582 Chr1 18026868 18029563 PREDICTED: integumentary mucin C.1 nan K10955
gene-evm.TU.Chr1.583 rna-evm.model.Chr1.583 Chr1 18034399 18054632 PREDICTED: Sodium/myo-inositol cotransporter 2 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr1.584 rna-evm.model.Chr1.584 Chr1 18056139 18059357 PREDICTED: Heat shock 70 kDa protein 12B nan K04043

For more detailed data, you can explore the Download section to access the full dataset.