CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.566 rna-evm.model.Chr1.566 Chr1 17339866 17353252 PREDICTED: Caseinolytic peptidase B protein homolog GO:0005515;GO:0005524 K03695
gene-evm.TU.Chr1.567 rna-evm.model.Chr1.567 Chr1 17353449 17358829 PREDICTED: Glucosamine-6-phosphate isomerase 1 GO:0004342;GO:0005975;GO:0006044 K02564
gene-evm.TU.Chr1.568 rna-evm.model.Chr1.568 Chr1 17369400 17377722 PREDICTED: Arfaptin-1 GO:0019904 K20314
gene-evm.TU.Chr1.569 rna-evm.model.Chr1.569 Chr1 17389714 17391728 PREDICTED: Mitochondrial import inner membrane translocase subunit Tim10B nan K17779
gene-evm.TU.Chr1.57 rna-evm.model.Chr1.57 Chr1 1937196 1981971 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22257
gene-evm.TU.Chr1.570 rna-evm.model.Chr1.570 Chr1 17400483 17405228 PREDICTED: Heart- and neural crest derivatives-expressed protein 2 GO:0046983 K18486
gene-evm.TU.Chr1.571 rna-evm.model.Chr1.571 Chr1 17431737 17436058 uncharacterized protein nan K16248
gene-evm.TU.Chr1.572 rna-evm.model.Chr1.572 Chr1 17440348 17453663 PREDICTED: Heart- and neural crest derivatives-expressed protein 2 GO:0046983 K18486
gene-evm.TU.Chr1.573 rna-evm.model.Chr1.573 Chr1 17457225 17468240 PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase GO:0000287;GO:0008897 K06133
gene-evm.TU.Chr1.574 rna-evm.model.Chr1.574 Chr1 17472992 17482152 PREDICTED: Transcriptional regulator ATRX nan K10779

For more detailed data, you can explore the Download section to access the full dataset.