CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.555 rna-evm.model.Chr1.555 Chr1 17070145 17078411 PREDICTED: Cytochrome b-c1 complex subunit 8 GO:0008121 K00418
gene-evm.TU.Chr1.556 rna-evm.model.Chr1.556 Chr1 17085870 17110481 uncharacterized protein nan nan
gene-evm.TU.Chr1.557 rna-evm.model.Chr1.557.1 Chr1 17114247 17165144 PREDICTED: Probable phosphorylase b kinase regulatory subunit alpha GO:0005516;GO:0005977 K07190
gene-evm.TU.Chr1.558 rna-evm.model.Chr1.558.1 Chr1 17172795 17191744 PREDICTED: Probable protein S-acyltransferase 23 GO:0005515 K20032
gene-evm.TU.Chr1.56 rna-evm.model.Chr1.56 Chr1 1917588 1927719 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.560 rna-evm.model.Chr1.560 Chr1 17209736 17215063 PREDICTED: Torsin-1A (Fragment) GO:0005524 K22990
gene-evm.TU.Chr1.561 rna-evm.model.Chr1.561 Chr1 17232821 17234877 PREDICTED: Torsin-1A (Fragment) GO:0005524 K22990
gene-evm.TU.Chr1.562 rna-evm.model.Chr1.562 Chr1 17272086 17275559 uncharacterized protein nan nan
gene-evm.TU.Chr1.563 rna-evm.model.Chr1.563 Chr1 17278052 17278339 uncharacterized protein nan K23284
gene-evm.TU.Chr1.565 rna-evm.model.Chr1.565 Chr1 17307390 17335320 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 38 GO:0016579;GO:0004843 K11854

For more detailed data, you can explore the Download section to access the full dataset.