CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.541 rna-evm.model.Chr1.541 Chr1 16745408 16757825 PREDICTED: Ribosome-binding protein 1 nan K20684
gene-evm.TU.Chr1.542 rna-evm.model.Chr1.542 Chr1 16776972 16779396 PREDICTED: integumentary mucin C.1 nan K10955
gene-evm.TU.Chr1.544 rna-evm.model.Chr1.544 Chr1 16788005 16798302 PREDICTED: Sodium/myo-inositol cotransporter 2 GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr1.545 rna-evm.model.Chr1.545 Chr1 16799854 16803117 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.547 rna-evm.model.Chr1.547 Chr1 16950197 16952941 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr1.548 rna-evm.model.Chr1.548 Chr1 16954349 16957478 uncharacterized protein nan K20961
gene-evm.TU.Chr1.55 rna-evm.model.Chr1.55 Chr1 1909610 1910666 uncharacterized protein nan K02111
gene-evm.TU.Chr1.552 rna-evm.model.Chr1.552 Chr1 16982157 16990718 uncharacterized protein nan K07069
gene-evm.TU.Chr1.553 rna-evm.model.Chr1.553 Chr1 17004381 17011733 PREDICTED: COMM domain-containing protein 8 nan K22564
gene-evm.TU.Chr1.554 rna-evm.model.Chr1.554.1 Chr1 17015852 17058876 PREDICTED: Probable phospholipid-transporting ATPase VA GO:0000287;GO:0140326;GO:0005524;GO:0015914;GO:0016020 K01530

For more detailed data, you can explore the Download section to access the full dataset.