CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.53 rna-evm.model.Chr1.53 Chr1 1904896 1907725 uncharacterized protein GO:0042981 K02084
gene-evm.TU.Chr1.530 rna-evm.model.Chr1.530 Chr1 16080384 16080749 PREDICTED: THAP domain-containing protein 11 nan K07492
gene-evm.TU.Chr1.532 rna-evm.model.Chr1.532 Chr1 16108056 16115886 uncharacterized protein nan K07499
gene-evm.TU.Chr1.533 rna-evm.model.Chr1.533 Chr1 16116838 16120520 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr1.535 rna-evm.model.Chr1.535 Chr1 16210924 16241979 PREDICTED: Putative methyltransferase NSUN7 GO:0008168 K15264
gene-evm.TU.Chr1.536 rna-evm.model.Chr1.536.1 Chr1 16438243 16446493 PREDICTED: Ubiquitin-conjugating enzyme E2-17 kDa nan K10573
gene-evm.TU.Chr1.538 rna-evm.model.Chr1.538 Chr1 16452011 16452562 PREDICTED: Solute carrier family 25 member 43 GO:0022857;GO:0055085 K15120
gene-evm.TU.Chr1.539 rna-evm.model.Chr1.539 Chr1 16453297 16455677 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr1.54 rna-evm.model.Chr1.54 Chr1 1908995 1909576 uncharacterized protein nan K17682
gene-evm.TU.Chr1.540 rna-evm.model.Chr1.540 Chr1 16460875 16484890 PREDICTED: Protease inhibitor 1 GO:0004867 K23622

For more detailed data, you can explore the Download section to access the full dataset.