CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.518 rna-evm.model.Chr1.518 Chr1 15941824 15951314 PREDICTED: sorting nexin-13 nan nan
gene-evm.TU.Chr1.519 rna-evm.model.Chr1.519 Chr1 15951336 15970833 PREDICTED: Zonadhesin nan K25030
gene-evm.TU.Chr1.52 rna-evm.model.Chr1.52 Chr1 1890618 1902013 PREDICTED: Endonuclease 8-like 3 GO:0003684;GO:0003906;GO:0006281;GO:0006289;GO:0008270;GO:0016799 K10569
gene-evm.TU.Chr1.521 rna-evm.model.Chr1.521 Chr1 15973335 15993716 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs adt-2 GO:0004222;GO:0006508 K08621
gene-evm.TU.Chr1.522 rna-evm.model.Chr1.522 Chr1 16002078 16016220 uncharacterized protein nan K07499
gene-evm.TU.Chr1.523 rna-evm.model.Chr1.523 Chr1 16017364 16018200 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr1.524 rna-evm.model.Chr1.524 Chr1 16020225 16020854 PREDICTED: mitogen-activated protein kinase kinase kinase 13 [EC:2.7.11.25] nan K06245
gene-evm.TU.Chr1.525 rna-evm.model.Chr1.525 Chr1 16021036 16021569 uncharacterized protein nan nan
gene-evm.TU.Chr1.528 rna-evm.model.Chr1.528 Chr1 16078402 16079175 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr1.529 rna-evm.model.Chr1.529 Chr1 16079614 16080186 PREDICTED: THAP domain-containing protein 11 nan K06695

For more detailed data, you can explore the Download section to access the full dataset.