CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.507 rna-evm.model.Chr1.507 Chr1 15210188 15219054 PREDICTED: Transmembrane protein 165 nan K23541
gene-evm.TU.Chr1.508 rna-evm.model.Chr1.508 Chr1 15233749 15237500 uncharacterized protein nan K10145
gene-evm.TU.Chr1.509 rna-evm.model.Chr1.509 Chr1 15283163 15310308 PREDICTED: Tripartite motif-containing protein 2 GO:0005515;GO:0008270 K11997
gene-evm.TU.Chr1.510 rna-evm.model.Chr1.510 Chr1 15347418 15353889 PREDICTED: Autophagy-related protein 13 GO:0000045;GO:0006914;GO:1990316 K08331
gene-evm.TU.Chr1.511 rna-evm.model.Chr1.511 Chr1 15386611 15390100 PREDICTED: exonuclease 3'-5' domain-containing protein 1 nan nan
gene-evm.TU.Chr1.512 rna-evm.model.Chr1.512 Chr1 15424892 15451098 PREDICTED: piRNA biogenesis protein EXD1 nan K18740
gene-evm.TU.Chr1.513 rna-evm.model.Chr1.513 Chr1 15454891 15470486 PREDICTED: Coiled-coil domain-containing protein 22 homolog nan K23343
gene-evm.TU.Chr1.514 rna-evm.model.Chr1.514 Chr1 15474889 15497186 PREDICTED: Ubinuclein-2 GO:0005634;GO:0006325 K17492
gene-evm.TU.Chr1.515 rna-evm.model.Chr1.515 Chr1 15509709 15515775 PREDICTED: Acidic repeat-containing protein nan K26957
gene-evm.TU.Chr1.516 rna-evm.model.Chr1.516 Chr1 15598752 15688878 PREDICTED: Protein Fe65 homolog GO:0001540;GO:0005515 K04530

For more detailed data, you can explore the Download section to access the full dataset.