CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.493 rna-evm.model.Chr1.493 Chr1 14977433 14991362 PREDICTED: Exosome complex component RRP45 nan K03678
gene-evm.TU.Chr1.494 rna-evm.model.Chr1.494 Chr1 14995469 15023130 PREDICTED: CWF19-like protein 2 nan K24940
gene-evm.TU.Chr1.495 rna-evm.model.Chr1.495 Chr1 15023708 15045812 PREDICTED: RNA-binding protein 41 GO:0003676 K13157
gene-evm.TU.Chr1.498 rna-evm.model.Chr1.498 Chr1 15042902 15059238 PREDICTED: Protein SGT1 homolog GO:0005515 K12795
gene-evm.TU.Chr1.499 rna-evm.model.Chr1.499 Chr1 15063037 15065415 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K11997
gene-evm.TU.Chr1.5 rna-evm.model.Chr1.5 Chr1 179861 182977 PREDICTED: hemicentin-2-like nan K06707
gene-evm.TU.Chr1.50 rna-evm.model.Chr1.50 Chr1 1859639 1864508 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr1.503 rna-evm.model.Chr1.503 Chr1 15116675 15124596 PREDICTED: Mycocerosic acid synthase nan K13614
gene-evm.TU.Chr1.505 rna-evm.model.Chr1.505 Chr1 15160014 15178576 PREDICTED: Mycocerosic acid synthase nan K13614
gene-evm.TU.Chr1.506 rna-evm.model.Chr1.506 Chr1 15185331 15190943 uncharacterized protein nan K03707

For more detailed data, you can explore the Download section to access the full dataset.