CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.483 rna-evm.model.Chr1.483 Chr1 14441706 14453617 PREDICTED: myosin heavy chain nan K20282
gene-evm.TU.Chr1.484 rna-evm.model.Chr1.484 Chr1 14514628 14517028 uncharacterized protein nan nan
gene-evm.TU.Chr1.485 rna-evm.model.Chr1.485 Chr1 14558974 14559312 uncharacterized protein nan K25786
gene-evm.TU.Chr1.486 rna-evm.model.Chr1.486 Chr1 14814312 14845120 PREDICTED: Oral-facial-digital syndrome 1 protein GO:0005515 K16480
gene-evm.TU.Chr1.488 rna-evm.model.Chr1.488 Chr1 14851881 14855130 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr1.489 rna-evm.model.Chr1.489 Chr1 14865801 14894534 PREDICTED: Macrophage mannose receptor 1 nan K06468
gene-evm.TU.Chr1.49_evm.TU.Chr1.51 rna-evm.model.Chr1.49_evm.model.Chr1.51 Chr1 1846604 1883581 PREDICTED: Tubulin beta chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07375
gene-evm.TU.Chr1.490 rna-evm.model.Chr1.490 Chr1 14898983 14901364 PREDICTED: Leucine-rich repeat and fibronectin type-III domain-containing protein 5 GO:0005515 K16358
gene-evm.TU.Chr1.491 rna-evm.model.Chr1.491 Chr1 14912267 14963066 PREDICTED: DNA repair protein RAD50 nan K10866
gene-evm.TU.Chr1.492 rna-evm.model.Chr1.492 Chr1 14968654 14974540 PREDICTED: G2/mitotic-specific cyclin-A GO:0005634 K06627

For more detailed data, you can explore the Download section to access the full dataset.