CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.472 rna-evm.model.Chr1.472 Chr1 14039799 14040344 PREDICTED: Solute carrier family 25 member 43 GO:0022857;GO:0055085 K15120
gene-evm.TU.Chr1.474 rna-evm.model.Chr1.474.1 Chr1 14058111 14086527 PREDICTED: Protease inhibitor 1 GO:0004867 K23622
gene-evm.TU.Chr1.475 rna-evm.model.Chr1.475 Chr1 14092169 14095924 PREDICTED: A-kinase anchor protein 17A nan K13169
gene-evm.TU.Chr1.476 rna-evm.model.Chr1.476 Chr1 14113241 14229640 PREDICTED: Neurotrypsin GO:0005044;GO:0005509;GO:0016020 K24469
gene-evm.TU.Chr1.478 rna-evm.model.Chr1.478 Chr1 14254678 14312972 PREDICTED: Deleted in malignant brain tumors 1 protein GO:0005044;GO:0005509;GO:0016020 K13912
gene-evm.TU.Chr1.479 rna-evm.model.Chr1.479 Chr1 14337901 14348493 PREDICTED: FAS-associated death domain protein GO:0005515;GO:0007165 K02373
gene-evm.TU.Chr1.48 rna-evm.model.Chr1.48 Chr1 1811074 1841740 PREDICTED: Tubulin beta-4B chain (Fragments) GO:0003924;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr1.480 rna-evm.model.Chr1.480 Chr1 14377702 14413783 PREDICTED: RING finger protein 150 nan K15701
gene-evm.TU.Chr1.481 rna-evm.model.Chr1.481 Chr1 14418250 14435241 PREDICTED: F-box and WD-40 domain protein 7 GO:0005515 K18953
gene-evm.TU.Chr1.482 rna-evm.model.Chr1.482 Chr1 14436511 14439418 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22257

For more detailed data, you can explore the Download section to access the full dataset.