CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.460 rna-evm.model.Chr1.460 Chr1 13393837 13403137 PREDICTED: Autophagy-related protein 13 GO:0000045;GO:0006914;GO:1990316 K08331
gene-evm.TU.Chr1.461 rna-evm.model.Chr1.461 Chr1 13435464 13441697 PREDICTED: exonuclease 3'-5' domain-containing protein 1 nan nan
gene-evm.TU.Chr1.462 rna-evm.model.Chr1.462 Chr1 13462978 13479228 PREDICTED: Coiled-coil domain-containing protein 22 homolog nan K23343
gene-evm.TU.Chr1.463 rna-evm.model.Chr1.463 Chr1 13487999 13489018 PREDICTED: CD109 antigen nan K03631
gene-evm.TU.Chr1.464 rna-evm.model.Chr1.464 Chr1 13494937 13509364 PREDICTED: Ubinuclein-2 GO:0005634;GO:0006325 K17492
gene-evm.TU.Chr1.465 rna-evm.model.Chr1.465 Chr1 13525229 13531117 PREDICTED: Acidic repeat-containing protein nan K26957
gene-evm.TU.Chr1.466 rna-evm.model.Chr1.466 Chr1 13560657 13561367 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K14059
gene-evm.TU.Chr1.467 rna-evm.model.Chr1.467 Chr1 13600466 13696651 PREDICTED: Protein Fe65 homolog GO:0001540;GO:0005515 K04530
gene-evm.TU.Chr1.47 rna-evm.model.Chr1.47 Chr1 1785883 1805582 PREDICTED: Inverted formin-2 GO:0003779;GO:0016043;GO:0031267;GO:0030036 K23958
gene-evm.TU.Chr1.470 rna-evm.model.Chr1.470 Chr1 14030567 14034677 PREDICTED: Ubiquitin-conjugating enzyme E2 A nan K10573

For more detailed data, you can explore the Download section to access the full dataset.