CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.446 rna-evm.model.Chr1.446 Chr1 13029776 13070548 PREDICTED: CWF19-like protein 2 nan K24940
gene-evm.TU.Chr1.447 rna-evm.model.Chr1.447 Chr1 13071631 13092739 PREDICTED: RNA-binding protein 41 GO:0003676 K13157
gene-evm.TU.Chr1.448 rna-evm.model.Chr1.448 Chr1 13095689 13105485 PREDICTED: Protein SGT1 homolog GO:0005515 K12795
gene-evm.TU.Chr1.449 rna-evm.model.Chr1.449 Chr1 13107302 13111826 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K11997
gene-evm.TU.Chr1.455 rna-evm.model.Chr1.455 Chr1 13213814 13237262 PREDICTED: Mycocerosic acid synthase nan K13614
gene-evm.TU.Chr1.456 rna-evm.model.Chr1.456 Chr1 13248583 13251504 uncharacterized protein nan K03707
gene-evm.TU.Chr1.457 rna-evm.model.Chr1.457 Chr1 13266304 13273996 PREDICTED: Transmembrane protein 165 nan K23541
gene-evm.TU.Chr1.458 rna-evm.model.Chr1.458 Chr1 13286416 13289599 uncharacterized protein nan nan
gene-evm.TU.Chr1.459 rna-evm.model.Chr1.459 Chr1 13333323 13357275 PREDICTED: Tripartite motif-containing protein 2 GO:0005515;GO:0008270 K11997
gene-evm.TU.Chr1.46 rna-evm.model.Chr1.46 Chr1 1773254 1776143 PREDICTED: Solute carrier family 25 member 35 nan K15117

For more detailed data, you can explore the Download section to access the full dataset.