CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.433 rna-evm.model.Chr1.433 Chr1 12659628 12662507 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22257
gene-evm.TU.Chr1.434 rna-evm.model.Chr1.434 Chr1 12665129 12694029 PREDICTED: myosin heavy chain nan K20282
gene-evm.TU.Chr1.435 rna-evm.model.Chr1.435 Chr1 12714274 12740101 uncharacterized protein nan K14778
gene-evm.TU.Chr1.437 rna-evm.model.Chr1.437 Chr1 12832288 12834776 PREDICTED: F-box only protein 8 GO:0005085;GO:0032012 K10294
gene-evm.TU.Chr1.438 rna-evm.model.Chr1.438 Chr1 12868141 12896724 PREDICTED: Oral-facial-digital syndrome 1 protein GO:0005515 K16480
gene-evm.TU.Chr1.44 rna-evm.model.Chr1.44 Chr1 1669893 1674374 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.441 rna-evm.model.Chr1.441 Chr1 12939572 12941812 PREDICTED: Leucine-rich repeat and fibronectin type-III domain-containing protein 5 GO:0005515 K16358
gene-evm.TU.Chr1.443 rna-evm.model.Chr1.443 Chr1 12954195 12999332 PREDICTED: DNA repair protein RAD50 nan K10866
gene-evm.TU.Chr1.444 rna-evm.model.Chr1.444 Chr1 13005711 13011446 PREDICTED: G2/mitotic-specific cyclin-A GO:0005634 K06627
gene-evm.TU.Chr1.445 rna-evm.model.Chr1.445 Chr1 13014522 13027115 PREDICTED: Exosome complex component RRP45 nan K03678

For more detailed data, you can explore the Download section to access the full dataset.