CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.90 rna-evm.model.Chr19.90 Chr19 5944452 5984723 PREDICTED: Death domain-containing protein 1 GO:0005515;GO:0007165 K10130
gene-evm.TU.Chr19.900 rna-evm.model.Chr19.900 Chr19 29845402 29877196 PREDICTED: Suprabasin nan K06841
gene-evm.TU.Chr19.901 rna-evm.model.Chr19.901 Chr19 29883708 29963392 PREDICTED: Hemicentin-1 nan K06841
gene-evm.TU.Chr19.903 rna-evm.model.Chr19.903 Chr19 29975294 29988504 PREDICTED: LOW QUALITY PROTEIN: mucin-2 nan K06757
gene-evm.TU.Chr19.904 rna-evm.model.Chr19.904 Chr19 29996392 29999691 PREDICTED: DNA helicase MCM9 [EC:3.6.4.12] nan nan
gene-evm.TU.Chr19.905 rna-evm.model.Chr19.905 Chr19 30003239 30030950 PREDICTED: tensin nan K19896
gene-evm.TU.Chr19.907 rna-evm.model.Chr19.907 Chr19 30044971 30045951 PREDICTED: coatomer subunit beta' nan nan
gene-evm.TU.Chr19.908 rna-evm.model.Chr19.908 Chr19 30055093 30073887 PREDICTED: Alpha-mannosidase 2 GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr19.909 rna-evm.model.Chr19.909 Chr19 30082220 30083614 PREDICTED: AF4/FMR2 family member 4 nan K11126
gene-evm.TU.Chr19.91 rna-evm.model.Chr19.91 Chr19 5999456 6003349 PREDICTED: Talin rod domain-containing protein 1 nan K06271

For more detailed data, you can explore the Download section to access the full dataset.