CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.884 rna-evm.model.Chr19.884 Chr19 29296700 29307118 PREDICTED: Zinc finger protein 596 GO:0003676 K09230
gene-evm.TU.Chr19.887 rna-evm.model.Chr19.887 Chr19 29333768 29337634 PREDICTED: Neuroligin-4, X-linked GO:0004104 K07378
gene-evm.TU.Chr19.888 rna-evm.model.Chr19.888 Chr19 29347833 29361695 PREDICTED: Potassium voltage-gated channel subfamily C member 1 GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04890
gene-evm.TU.Chr19.889 rna-evm.model.Chr19.889 Chr19 29365424 29370619 PREDICTED: Uncharacterized oxidoreductase YrbE GO:0016491;GO:0055114 K00010
gene-evm.TU.Chr19.89 rna-evm.model.Chr19.89 Chr19 5916506 5933874 PREDICTED: Angiopoietin-4 nan K25356
gene-evm.TU.Chr19.892 rna-evm.model.Chr19.892.1 Chr19 29395200 29429374 PREDICTED: Multidrug resistance-associated protein 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05667
gene-evm.TU.Chr19.893 rna-evm.model.Chr19.893 Chr19 29469313 29499288 uncharacterized protein nan K09764
gene-evm.TU.Chr19.894 rna-evm.model.Chr19.894 Chr19 29509122 29519983 PREDICTED: Signal peptidase complex catalytic subunit SEC11C GO:0005787;GO:0006465;GO:0008233;GO:0008236;GO:0016020 K13280
gene-evm.TU.Chr19.895 rna-evm.model.Chr19.895 Chr19 29527361 29531546 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 GO:0005509;GO:0007154;GO:0016020 K21635
gene-evm.TU.Chr19.896 rna-evm.model.Chr19.896 Chr19 29625021 29625905 PREDICTED: meprin B [EC:3.4.24.63] nan K17966

For more detailed data, you can explore the Download section to access the full dataset.