CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.826 rna-evm.model.Chr19.826 Chr19 26467134 26473853 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K14040
gene-evm.TU.Chr19.83 rna-evm.model.Chr19.83.1 Chr19 5543595 5556284 PREDICTED: exocyst complex component 1 nan K14458
gene-evm.TU.Chr19.832 rna-evm.model.Chr19.832 Chr19 26663267 26794204 PREDICTED: Coadhesin (Fragment) nan K16857
gene-evm.TU.Chr19.835 rna-evm.model.Chr19.835 Chr19 26804603 26814321 PREDICTED: Integrase/recombinase xerD homolog nan nan
gene-evm.TU.Chr19.837 rna-evm.model.Chr19.837 Chr19 26858899 26980670 PREDICTED: Talin-1 GO:0001726;GO:0003779;GO:0005200;GO:0005856;GO:0005925;GO:0006897;GO:0007016;GO:0030276 K06271
gene-evm.TU.Chr19.838 rna-evm.model.Chr19.838 Chr19 26986613 26988328 PREDICTED: MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 5 nan nan
gene-evm.TU.Chr19.839 rna-evm.model.Chr19.839 Chr19 27015456 27063683 PREDICTED: Multiple epidermal growth factor-like domains protein 10 GO:0005515 K24331
gene-evm.TU.Chr19.841 rna-evm.model.Chr19.841 Chr19 27086378 27107879 PREDICTED: E3 ubiquitin-protein ligase arkadia-C nan K10635
gene-evm.TU.Chr19.842 rna-evm.model.Chr19.842 Chr19 27112273 27124225 PREDICTED: Ficolin-1 nan K10104
gene-evm.TU.Chr19.843 rna-evm.model.Chr19.843 Chr19 27121179 27124225 PREDICTED: Ficolin-1 nan K10104

For more detailed data, you can explore the Download section to access the full dataset.