CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.844 rna-evm.model.Chr19.844 Chr19 27126450 27133893 PREDICTED: Carbohydrate sulfotransferase 15 nan K08106
gene-evm.TU.Chr19.845 rna-evm.model.Chr19.845 Chr19 27141531 27154500 PREDICTED: energy transducer TonB nan K20687
gene-evm.TU.Chr19.846 rna-evm.model.Chr19.846 Chr19 27172372 27194456 PREDICTED: SCL-interrupting locus protein nan K23931
gene-evm.TU.Chr19.848 rna-evm.model.Chr19.848 Chr19 27290789 27291067 PREDICTED: protein ALP1-like nan nan
gene-evm.TU.Chr19.849 rna-evm.model.Chr19.849 Chr19 27259387 27495490 PREDICTED: Atrial natriuretic peptide receptor 3 nan K12325
gene-evm.TU.Chr19.850 rna-evm.model.Chr19.850 Chr19 27652155 27663534 PREDICTED: Atrial natriuretic peptide receptor 3 nan K12325
gene-evm.TU.Chr19.851 rna-evm.model.Chr19.851 Chr19 27740378 27744386 PREDICTED: atrial natriuretic peptide receptor A [EC:4.6.1.2] nan K12325
gene-evm.TU.Chr19.852 rna-evm.model.Chr19.852 Chr19 27785660 27786445 PREDICTED: Atrial natriuretic peptide receptor 3 nan K12325
gene-evm.TU.Chr19.853 rna-evm.model.Chr19.853 Chr19 27795810 27796553 PREDICTED: Atrial natriuretic peptide receptor 3 nan K12325
gene-evm.TU.Chr19.857 rna-evm.model.Chr19.857 Chr19 27956783 27964429 PREDICTED: Atrial natriuretic peptide receptor 1 nan K12323

For more detailed data, you can explore the Download section to access the full dataset.