CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.924 rna-evm.model.Chr19.924 Chr19 30803713 30804960 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr19.925 rna-evm.model.Chr19.925 Chr19 30844477 30853069 PREDICTED: ankyrin repeat domain-containing protein 50 nan nan
gene-evm.TU.Chr19.926 rna-evm.model.Chr19.926 Chr19 30876658 30877380 uncharacterized protein nan K07020
gene-evm.TU.Chr19.927 rna-evm.model.Chr19.927 Chr19 30879008 30880153 PREDICTED: Galactoside 2-alpha-L-fucosyltransferase 1 GO:0005975;GO:0008107;GO:0016020 K00718
gene-evm.TU.Chr19.928 rna-evm.model.Chr19.928 Chr19 30889498 30900529 PREDICTED: Macrophage mannose receptor 1 nan K06560
gene-evm.TU.Chr19.929 rna-evm.model.Chr19.929 Chr19 30903074 30907054 PREDICTED: rhamnogalacturonan II specific xylosyltransferase [EC:2.4.2.-] nan K11714
gene-evm.TU.Chr19.930 rna-evm.model.Chr19.930 Chr19 30909594 30913198 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr19.931 rna-evm.model.Chr19.931 Chr19 30915341 30921395 uncharacterized protein nan nan
gene-evm.TU.Chr19.932 rna-evm.model.Chr19.932 Chr19 30922722 30925961 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K20361
gene-evm.TU.Chr19.935 rna-evm.model.Chr19.935 Chr19 30954587 30957426 PREDICTED: S-antigen protein nan K17561

For more detailed data, you can explore the Download section to access the full dataset.