CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.910 rna-evm.model.Chr19.910 Chr19 30084379 30103696 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K06723
gene-evm.TU.Chr19.911 rna-evm.model.Chr19.911 Chr19 30107121 30116523 PREDICTED: selectin, platele nan K23820
gene-evm.TU.Chr19.912 rna-evm.model.Chr19.912.1 Chr19 30213173 30308555 PREDICTED: Transcription factor 12 GO:0046983 K15603
gene-evm.TU.Chr19.913 rna-evm.model.Chr19.913 Chr19 30322983 30399801 PREDICTED: Tyrosine-protein kinase Fer GO:0004672;GO:0004713;GO:0005154;GO:0005524;GO:0006468;GO:0008283;GO:0030335;GO:0031532;GO:0042058;GO:0051092 K08889
gene-evm.TU.Chr19.914 rna-evm.model.Chr19.914 Chr19 30411630 30416369 PREDICTED: tight junction protein 1 GO:0042981 K02084
gene-evm.TU.Chr19.915 rna-evm.model.Chr19.915 Chr19 30448395 30509191 PREDICTED: Tight junction protein ZO-1 GO:0005515 K05701
gene-evm.TU.Chr19.916 rna-evm.model.Chr19.916 Chr19 30523701 30547000 PREDICTED: CTD small phosphatase-like protein 2 nan K17616
gene-evm.TU.Chr19.921 rna-evm.model.Chr19.921 Chr19 30606702 30622488 PREDICTED: NADPH oxidase 5 GO:0005509;GO:0016020;GO:0016175;GO:0016491;GO:0042554;GO:0055114 K21424
gene-evm.TU.Chr19.922 rna-evm.model.Chr19.922 Chr19 30630369 30777570 PREDICTED: Protein prune homolog 2 GO:0005737;GO:0016462 K18449
gene-evm.TU.Chr19.923 rna-evm.model.Chr19.923 Chr19 30780201 30802671 PREDICTED: Testis-expressed protein 30 GO:0005230;GO:0006811;GO:0016020 K05186

For more detailed data, you can explore the Download section to access the full dataset.