CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.870 rna-evm.model.Chr19.870 Chr19 28921096 28922471 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr19.871 rna-evm.model.Chr19.871 Chr19 28922526 28925387 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23204
gene-evm.TU.Chr19.872 rna-evm.model.Chr19.872 Chr19 28934646 28936975 PREDICTED: Teretoxin Tan14.1 nan nan
gene-evm.TU.Chr19.874 rna-evm.model.Chr19.874 Chr19 28963332 28976164 PREDICTED: LRP chaperone MESD GO:0006457 K25366
gene-evm.TU.Chr19.875 rna-evm.model.Chr19.875 Chr19 28988708 29022435 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 8 GO:0005515;GO:0016579;GO:0004843 K11839
gene-evm.TU.Chr19.876 rna-evm.model.Chr19.876 Chr19 29038100 29055700 PREDICTED: Ras-related protein Rab-27A GO:0003924;GO:0005525 K07885
gene-evm.TU.Chr19.877 rna-evm.model.Chr19.877 Chr19 29063565 29064593 PREDICTED: Galanin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr19.878 rna-evm.model.Chr19.878 Chr19 29069317 29102207 PREDICTED: Multidrug resistance-associated protein 1 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05667
gene-evm.TU.Chr19.879 rna-evm.model.Chr19.879 Chr19 29109254 29118699 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900
gene-evm.TU.Chr19.882 rna-evm.model.Chr19.882 Chr19 29248018 29261843 PREDICTED: mucin-2 nan K23820

For more detailed data, you can explore the Download section to access the full dataset.