CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.815 rna-evm.model.Chr19.815 Chr19 26202066 26213784 PREDICTED: F-box/LRR-repeat protein 17 GO:0005515 K10283
gene-evm.TU.Chr19.816 rna-evm.model.Chr19.816 Chr19 26216710 26218106 PREDICTED: Tenascin-R nan K10104
gene-evm.TU.Chr19.818 rna-evm.model.Chr19.818 Chr19 26241186 26242861 PREDICTED: Jerky protein homolog-like GO:0003676 K26274
gene-evm.TU.Chr19.819 rna-evm.model.Chr19.819 Chr19 26248406 26260319 PREDICTED: Solute carrier family 46 member 3 GO:0016020;GO:0055085 K14613
gene-evm.TU.Chr19.820 rna-evm.model.Chr19.820 Chr19 26260454 26264152 PREDICTED: integrator complex subunit 1 nan K20840
gene-evm.TU.Chr19.821 rna-evm.model.Chr19.821.1 Chr19 26274938 26320299 PREDICTED: Coronin-1B GO:0005515 K13887
gene-evm.TU.Chr19.822 rna-evm.model.Chr19.822 Chr19 26352276 26401823 PREDICTED: Obscurin-like protein 1 nan K17531
gene-evm.TU.Chr19.823 rna-evm.model.Chr19.823 Chr19 26420760 26424531 PREDICTED: obscurin-like protein 1 nan K12567
gene-evm.TU.Chr19.824 rna-evm.model.Chr19.824 Chr19 26424643 26430956 uncharacterized protein GO:0008270 K12021
gene-evm.TU.Chr19.825 rna-evm.model.Chr19.825 Chr19 26445985 26453272 PREDICTED: Titin nan K17531

For more detailed data, you can explore the Download section to access the full dataset.