CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.789 rna-evm.model.Chr19.789 Chr19 25532251 25556791 PREDICTED: Paired amphipathic helix protein Sin3b GO:0003714;GO:0006355;GO:0016580 K23213
gene-evm.TU.Chr19.79 rna-evm.model.Chr19.79 Chr19 5497060 5500542 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] GO:0004803;GO:0006313 K23209
gene-evm.TU.Chr19.790 rna-evm.model.Chr19.790 Chr19 25566419 25573239 PREDICTED: Cytochrome c oxidase subunit 7C, mitochondrial GO:0004129 K02272
gene-evm.TU.Chr19.791_evm.TU.Chr19.792 rna-evm.model.Chr19.791_evm.model.Chr19.792 Chr19 25578023 25626047 PREDICTED: Myeloid differentiation primary response protein MyD88 GO:0002755;GO:0005515;GO:0007165;GO:0043123;GO:0070976 K04729
gene-evm.TU.Chr19.793 rna-evm.model.Chr19.793 Chr19 25630430 25636851 PREDICTED: Cytochrome P450 2D4 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr19.795 rna-evm.model.Chr19.795 Chr19 25651319 25652668 uncharacterized protein nan nan
gene-evm.TU.Chr19.796 rna-evm.model.Chr19.796 Chr19 25656997 25658459 uncharacterized protein nan nan
gene-evm.TU.Chr19.799 rna-evm.model.Chr19.799 Chr19 25675822 25677189 PREDICTED: cyclic GMP-AMP synthase [EC:2.7.7.86] nan K17834
gene-evm.TU.Chr19.8 rna-evm.model.Chr19.8 Chr19 407444 409240 PREDICTED: dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] nan nan
gene-evm.TU.Chr19.80 rna-evm.model.Chr19.80 Chr19 5501043 5504514 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255

For more detailed data, you can explore the Download section to access the full dataset.