CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.776 rna-evm.model.Chr19.776 Chr19 24891789 24896948 PREDICTED: Plasma kallikrein GO:0004252;GO:0006508 K23440
gene-evm.TU.Chr19.777 rna-evm.model.Chr19.777 Chr19 24899624 24975440 PREDICTED: Chitin synthase chs-2 GO:0005515;GO:0016758 K00698
gene-evm.TU.Chr19.779 rna-evm.model.Chr19.779 Chr19 24976462 25026164 PREDICTED: MAM and LDL-receptor class A domain-containing protein 1 (Fragment) GO:0016020 K16857
gene-evm.TU.Chr19.780 rna-evm.model.Chr19.780 Chr19 25030978 25031744 PREDICTED: gamma-glutamyl hydrolase [EC:3.4.19.9] nan K26737
gene-evm.TU.Chr19.781 rna-evm.model.Chr19.781 Chr19 25037833 25053179 PREDICTED: Hydroxysteroid 11-beta-dehydrogenase 1-like protein nan K15680
gene-evm.TU.Chr19.782 rna-evm.model.Chr19.782 Chr19 25073386 25076093 PREDICTED: syncoilin 1 nan K10584
gene-evm.TU.Chr19.784 rna-evm.model.Chr19.784 Chr19 25389726 25440292 PREDICTED: Mothers against decapentaplegic homolog 3 GO:0006355 K23605
gene-evm.TU.Chr19.785 rna-evm.model.Chr19.785.1 Chr19 25448842 25483543 PREDICTED: Ras-related protein Rab-8A nan K20282
gene-evm.TU.Chr19.786 rna-evm.model.Chr19.786 Chr19 25496730 25500458 uncharacterized protein nan K13052
gene-evm.TU.Chr19.788 rna-evm.model.Chr19.788 Chr19 25518496 25531494 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.