CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.761 rna-evm.model.Chr19.761 Chr19 24243652 24249496 PREDICTED: Protein unc-93 homolog A nan K26151
gene-evm.TU.Chr19.762 rna-evm.model.Chr19.762 Chr19 24345002 24353984 uncharacterized protein nan K07408
gene-evm.TU.Chr19.763 rna-evm.model.Chr19.763 Chr19 24377242 24385617 PREDICTED: Mannosyl phosphorylinositol ceramide synthase CSH1 nan K22721
gene-evm.TU.Chr19.765 rna-evm.model.Chr19.765 Chr19 24473558 24473989 PREDICTED: KRAB domain-containing zinc finger protein nan K07499
gene-evm.TU.Chr19.768 rna-evm.model.Chr19.768 Chr19 24691434 24712535 PREDICTED: Receptor-type tyrosine-protein phosphatase alpha GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr19.769 rna-evm.model.Chr19.769 Chr19 24712778 24749568 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr19.770 rna-evm.model.Chr19.770 Chr19 24752732 24788034 PREDICTED: Receptor-type tyrosine-protein phosphatase alpha GO:0004725;GO:0006470;GO:0016311;GO:0016791 K18032
gene-evm.TU.Chr19.771 rna-evm.model.Chr19.771 Chr19 24796363 24797577 PREDICTED: Cell death abnormality protein 1 nan K24333
gene-evm.TU.Chr19.772 rna-evm.model.Chr19.772 Chr19 24813161 24814261 PREDICTED: Platelet endothelial aggregation receptor 1 nan K24318
gene-evm.TU.Chr19.774 rna-evm.model.Chr19.774 Chr19 24852756 24853648 PREDICTED: CD109 antigen nan K06243

For more detailed data, you can explore the Download section to access the full dataset.