CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.737 rna-evm.model.Chr19.737 Chr19 23730383 23743537 PREDICTED: tripartite motif-containing protein 2/3 GO:0008270 K12026
gene-evm.TU.Chr19.738 rna-evm.model.Chr19.738 Chr19 23747740 23751212 PREDICTED: Tubulin alpha-1A chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr19.74 rna-evm.model.Chr19.74 Chr19 5237859 5239776 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K18440
gene-evm.TU.Chr19.740 rna-evm.model.Chr19.740 Chr19 23762370 23766764 PREDICTED: Zinc finger protein 28 homolog GO:0003676 K09228
gene-evm.TU.Chr19.741 rna-evm.model.Chr19.741 Chr19 23772154 23789300 PREDICTED: Huntingtin-interacting protein K nan K03626
gene-evm.TU.Chr19.742 rna-evm.model.Chr19.742 Chr19 23799343 23802868 PREDICTED: AN1-type zinc finger protein 6 GO:0003677;GO:0008270 K24687
gene-evm.TU.Chr19.743 rna-evm.model.Chr19.743 Chr19 23812518 23820665 PREDICTED: Transcription initiation factor IIA subunit 2 GO:0005672;GO:0006367 K03123
gene-evm.TU.Chr19.744 rna-evm.model.Chr19.744 Chr19 23826186 23848315 PREDICTED: LysM and putative peptidoglycan-binding domain-containing protein 2 nan K19223
gene-evm.TU.Chr19.745 rna-evm.model.Chr19.745 Chr19 23856831 23857736 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr19.747 rna-evm.model.Chr19.747 Chr19 23891642 23898707 PREDICTED: Laminin subunit alpha-5 nan K24318

For more detailed data, you can explore the Download section to access the full dataset.