CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.713 rna-evm.model.Chr19.713 Chr19 22692560 22702441 PREDICTED: Acidic leucine-rich nuclear phosphoprotein 32 family member A GO:0005515 K18646
gene-evm.TU.Chr19.714 rna-evm.model.Chr19.714 Chr19 22706383 22737978 PREDICTED: Dipeptidyl peptidase 9 GO:0006508;GO:0008236 K08656
gene-evm.TU.Chr19.716 rna-evm.model.Chr19.716 Chr19 22799219 22817443 PREDICTED: Methyltransferase-like protein 25 nan K04815
gene-evm.TU.Chr19.717 rna-evm.model.Chr19.717 Chr19 22817564 22818691 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K15189
gene-evm.TU.Chr19.718 rna-evm.model.Chr19.718 Chr19 22818697 22819842 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K25467
gene-evm.TU.Chr19.719 rna-evm.model.Chr19.719 Chr19 22824792 22860996 PREDICTED: High mobility group protein 20A nan K24660
gene-evm.TU.Chr19.720 rna-evm.model.Chr19.720 Chr19 22861260 22909694 uncharacterized protein nan K17538
gene-evm.TU.Chr19.722 rna-evm.model.Chr19.722 Chr19 23050799 23191147 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr19.723 rna-evm.model.Chr19.723 Chr19 23206579 23215922 PREDICTED: Coadhesin (Fragment) nan K08621
gene-evm.TU.Chr19.724 rna-evm.model.Chr19.724 Chr19 23239541 23247334 PREDICTED: tensin nan nan

For more detailed data, you can explore the Download section to access the full dataset.