CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.701 rna-evm.model.Chr19.701 Chr19 22451092 22468352 PREDICTED: Heterogeneous nuclear ribonucleoprotein Q GO:0003676 K13160
gene-evm.TU.Chr19.702 rna-evm.model.Chr19.702 Chr19 22475763 22477494 PREDICTED: Short-chain collagen C4 (Fragment) nan K17928
gene-evm.TU.Chr19.704 rna-evm.model.Chr19.704 Chr19 22576108 22579595 PREDICTED: Tripartite motif-containing protein 45 nan K12026
gene-evm.TU.Chr19.706 rna-evm.model.Chr19.706 Chr19 22589246 22593759 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr19.707 rna-evm.model.Chr19.707 Chr19 22600799 22602876 uncharacterized protein nan K07114
gene-evm.TU.Chr19.708 rna-evm.model.Chr19.708 Chr19 22635113 22640486 PREDICTED: CDC42 small effector protein 2 GO:0031267;GO:0035023 K05747
gene-evm.TU.Chr19.709 rna-evm.model.Chr19.709 Chr19 22650457 22664566 PREDICTED: Zinc finger protein with KRAB and SCAN domains 8 GO:0003676 K24853
gene-evm.TU.Chr19.710 rna-evm.model.Chr19.710.1 Chr19 22665681 22674063 PREDICTED: Ras-related protein Rab-11B GO:0003924;GO:0005525 K07905
gene-evm.TU.Chr19.711 rna-evm.model.Chr19.711 Chr19 22681107 22685140 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member E-like nan K18646
gene-evm.TU.Chr19.712 rna-evm.model.Chr19.712 Chr19 22686264 22688365 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676;GO:0003677 K11496

For more detailed data, you can explore the Download section to access the full dataset.