CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.677 rna-evm.model.Chr19.677 Chr19 22095655 22101535 PREDICTED: Arrestin domain-containing protein 3 nan K26229
gene-evm.TU.Chr19.678 rna-evm.model.Chr19.678 Chr19 22107071 22108172 PREDICTED: Complement C1q-like protein 4 nan K24236
gene-evm.TU.Chr19.68 rna-evm.model.Chr19.68 Chr19 4678392 4678559 uncharacterized protein nan nan
gene-evm.TU.Chr19.680 rna-evm.model.Chr19.680 Chr19 22116254 22121230 uncharacterized protein nan K15146
gene-evm.TU.Chr19.681 rna-evm.model.Chr19.681 Chr19 22126160 22143462 PREDICTED: Dymeclin nan K23951
gene-evm.TU.Chr19.683 rna-evm.model.Chr19.683 Chr19 22174632 22184191 uncharacterized protein nan K15532
gene-evm.TU.Chr19.684 rna-evm.model.Chr19.684 Chr19 22199501 22207218 PREDICTED: Integrase/recombinase xerD homolog GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr19.685 rna-evm.model.Chr19.685 Chr19 22212340 22213128 PREDICTED: organic solute transporter subunit alpha nan K17578
gene-evm.TU.Chr19.686 rna-evm.model.Chr19.686 Chr19 22224775 22225779 PREDICTED: relaxin family peptide receptor 1 nan K02872
gene-evm.TU.Chr19.688 rna-evm.model.Chr19.688 Chr19 22249693 22250763 PREDICTED: Uncharacterized protein R554 nan K18650

For more detailed data, you can explore the Download section to access the full dataset.