CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.689 rna-evm.model.Chr19.689 Chr19 22248629 22263598 PREDICTED: Tripartite motif-containing protein 2 nan K12026
gene-evm.TU.Chr19.69 rna-evm.model.Chr19.69 Chr19 4745127 4745909 PREDICTED: nesprin-2 nan K17668
gene-evm.TU.Chr19.690 rna-evm.model.Chr19.690 Chr19 22275992 22277178 PREDICTED: MULTISPECIES: VWA domain-containing protein nan K10421
gene-evm.TU.Chr19.691 rna-evm.model.Chr19.691 Chr19 22277472 22278320 PREDICTED: BTB/POZ domain-containing protein KCTD18 nan K09432
gene-evm.TU.Chr19.696 rna-evm.model.Chr19.696 Chr19 22372792 22373456 PREDICTED: Seminal vesicle major clotting proteins nan K24339
gene-evm.TU.Chr19.697 rna-evm.model.Chr19.697 Chr19 22374355 22378187 PREDICTED: Netrin receptor UNC5B-a nan K16857
gene-evm.TU.Chr19.699 rna-evm.model.Chr19.699 Chr19 22415966 22441938 PREDICTED: Putative methyltransferase C9orf114 homolog nan K09142
gene-evm.TU.Chr19.7 rna-evm.model.Chr19.7 Chr19 405828 407186 PREDICTED: protocadherin-15 GO:0046872 nan
gene-evm.TU.Chr19.70 rna-evm.model.Chr19.70 Chr19 4996111 4997012 uncharacterized protein nan K13582
gene-evm.TU.Chr19.700 rna-evm.model.Chr19.700 Chr19 22443653 22445761 uncharacterized protein nan K15532

For more detailed data, you can explore the Download section to access the full dataset.