CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.666 rna-evm.model.Chr19.666 Chr19 21835256 21836332 PREDICTED: Complement C1q-like protein 3 nan K23284
gene-evm.TU.Chr19.667 rna-evm.model.Chr19.667 Chr19 21847120 21850200 PREDICTED: Hemicentin-1 nan K23284
gene-evm.TU.Chr19.668 rna-evm.model.Chr19.668 Chr19 21862564 21866536 uncharacterized protein nan nan
gene-evm.TU.Chr19.669 rna-evm.model.Chr19.669 Chr19 21871476 21874466 PREDICTED: restin homolog nan K17526
gene-evm.TU.Chr19.67 rna-evm.model.Chr19.67 Chr19 4677522 4677735 PREDICTED: chitinase [EC:3.2.1.14] nan nan
gene-evm.TU.Chr19.670 rna-evm.model.Chr19.670 Chr19 21884442 21900834 uncharacterized protein nan nan
gene-evm.TU.Chr19.671 rna-evm.model.Chr19.671 Chr19 21904840 21924427 PREDICTED: Mothers against decapentaplegic homolog 4 GO:0003700;GO:0005667;GO:0006355;GO:0007179 K04501
gene-evm.TU.Chr19.672 rna-evm.model.Chr19.672.6 Chr19 21931572 22010704 PREDICTED: Pyruvate kinase PKM GO:0000287;GO:0004743;GO:0006096;GO:0030955 K12406
gene-evm.TU.Chr19.675 rna-evm.model.Chr19.675.1 Chr19 22034030 22048212 uncharacterized protein nan K04703
gene-evm.TU.Chr19.676 rna-evm.model.Chr19.676.1 Chr19 22056268 22088799 PREDICTED: Mothers against decapentaplegic homolog 6 GO:0003700;GO:0005667;GO:0006355;GO:0007179 K04677

For more detailed data, you can explore the Download section to access the full dataset.