CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.642 rna-evm.model.Chr19.642 Chr19 21173962 21201584 PREDICTED: Autotransporter adhesin BpaC GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr19.643 rna-evm.model.Chr19.643 Chr19 21208764 21221335 PREDICTED: Cytochrome P450 3A18 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr19.644 rna-evm.model.Chr19.644 Chr19 21231211 21232164 PREDICTED: Heparan sulfate glucosamine 3-O-sulfotransferase 6 GO:0008146 K08104
gene-evm.TU.Chr19.646 rna-evm.model.Chr19.646 Chr19 21265598 21273129 PREDICTED: Cytochrome P450 3A4 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr19.647 rna-evm.model.Chr19.647 Chr19 21426749 21439651 PREDICTED: Cytochrome P450 3A12 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07424
gene-evm.TU.Chr19.648 rna-evm.model.Chr19.648 Chr19 21465922 21482726 PREDICTED: Lysophosphatidic acid phosphatase type 6 nan K14395
gene-evm.TU.Chr19.649 rna-evm.model.Chr19.649 Chr19 21498420 21526049 PREDICTED: chitinase [EC:3.2.1.14] nan K22018
gene-evm.TU.Chr19.65 rna-evm.model.Chr19.65 Chr19 4653382 4655302 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr19.650 rna-evm.model.Chr19.650 Chr19 21548651 21556766 PREDICTED: chitinase [EC:3.2.1.14] nan K22023
gene-evm.TU.Chr19.651 rna-evm.model.Chr19.651 Chr19 21576884 21589719 PREDICTED: chitinase [EC:3.2.1.14] nan K06501

For more detailed data, you can explore the Download section to access the full dataset.