CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.597 rna-evm.model.Chr19.597 Chr19 19746180 19799412 uncharacterized protein nan K17538
gene-evm.TU.Chr19.598 rna-evm.model.Chr19.598 Chr19 19803136 19805857 PREDICTED: Putative cell agglutination protein pfl3 nan K07099
gene-evm.TU.Chr19.599 rna-evm.model.Chr19.599 Chr19 19815937 19817853 PREDICTED: KRAB domain-containing zinc finger protein nan K01587
gene-evm.TU.Chr19.6 rna-evm.model.Chr19.6 Chr19 328222 336277 PREDICTED: SPRY domain-containing protein 3 nan K23334
gene-evm.TU.Chr19.60 rna-evm.model.Chr19.60 Chr19 4049566 4055932 uncharacterized protein nan K01142
gene-evm.TU.Chr19.600 rna-evm.model.Chr19.600 Chr19 19819832 19821451 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr19.605 rna-evm.model.Chr19.605 Chr19 19968142 19968825 PREDICTED: wingless-type MMTV integration site family, member 7 nan K22486
gene-evm.TU.Chr19.606 rna-evm.model.Chr19.606 Chr19 19986675 19994077 PREDICTED: tensin nan nan
gene-evm.TU.Chr19.607 rna-evm.model.Chr19.607 Chr19 20009380 20010228 uncharacterized protein nan K06532
gene-evm.TU.Chr19.609 rna-evm.model.Chr19.609 Chr19 20025139 20026099 PREDICTED: Complement C1q tumor necrosis factor-related protein 7 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.