CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.471 rna-evm.model.Chr19.471 Chr19 16305651 16314281 uncharacterized protein nan K25719
gene-evm.TU.Chr19.472 rna-evm.model.Chr19.472 Chr19 16318499 16325267 PREDICTED: Ras-related protein Rab-11B GO:0003924;GO:0005525 K07905
gene-evm.TU.Chr19.473_evm.TU.Chr19.474 rna-evm.model.Chr19.473_evm.model.Chr19.474 Chr19 16326707 16331985 PREDICTED: GTP-binding protein YPTM2 GO:0003924;GO:0005525 K07875
gene-evm.TU.Chr19.475 rna-evm.model.Chr19.475 Chr19 16334876 16355940 PREDICTED: Ras-related protein Rab-1 GO:0003924;GO:0005525 K07874
gene-evm.TU.Chr19.478 rna-evm.model.Chr19.478 Chr19 16567631 16623970 PREDICTED: Hemicentin-1 GO:0004252;GO:0006508 K04596
gene-evm.TU.Chr19.479 rna-evm.model.Chr19.479 Chr19 16627944 16647149 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K03985
gene-evm.TU.Chr19.48 rna-evm.model.Chr19.48 Chr19 3085460 3090533 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K09671
gene-evm.TU.Chr19.480 rna-evm.model.Chr19.480 Chr19 16647830 16653499 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K03985
gene-evm.TU.Chr19.483 rna-evm.model.Chr19.483 Chr19 16713932 16742826 PREDICTED: Fibropellin-3 GO:0005509 K16681
gene-evm.TU.Chr19.484 rna-evm.model.Chr19.484 Chr19 16750181 16755047 PREDICTED: Pancreatic secretory granule membrane major glycoprotein GP2 nan K19899

For more detailed data, you can explore the Download section to access the full dataset.