CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.498 rna-evm.model.Chr19.498 Chr19 17245155 17248658 PREDICTED: Neuronal acetylcholine receptor subunit non-alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr19.499 rna-evm.model.Chr19.499 Chr19 17253732 17255796 PREDICTED: Neuronal acetylcholine receptor subunit alpha-5 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr19.502 rna-evm.model.Chr19.502 Chr19 17259659 17261229 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr19.503 rna-evm.model.Chr19.503 Chr19 17267317 17270224 PREDICTED: Neuronal acetylcholine receptor subunit non-alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr19.506 rna-evm.model.Chr19.506 Chr19 17287079 17289530 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr19.507 rna-evm.model.Chr19.507 Chr19 17305736 17309695 PREDICTED: Gastrula zinc finger protein XlCGF57.1 (Fragment) GO:0003676 K22402
gene-evm.TU.Chr19.508 rna-evm.model.Chr19.508 Chr19 17327213 17333868 PREDICTED: Ornithine decarboxylase antizyme 1 GO:0008073 K16548
gene-evm.TU.Chr19.509 rna-evm.model.Chr19.509 Chr19 17350185 17389301 PREDICTED: Sodium- and chloride-dependent GABA transporter 2 GO:0016020 K05044
gene-evm.TU.Chr19.510 rna-evm.model.Chr19.510 Chr19 17394287 17402876 PREDICTED: Protein mono-ADP-ribosyltransferase PARP6 GO:0003950 K15258
gene-evm.TU.Chr19.511 rna-evm.model.Chr19.511 Chr19 17413706 17457244 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.