CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.448 rna-evm.model.Chr19.448 Chr19 15722288 15738534 uncharacterized protein nan K03855
gene-evm.TU.Chr19.449 rna-evm.model.Chr19.449.1 Chr19 15771738 15786255 PREDICTED: exocyst complex component 1 nan K14458
gene-evm.TU.Chr19.45 rna-evm.model.Chr19.45 Chr19 2766082 2840482 PREDICTED: Sodium-coupled monocarboxylate transporter 2 nan K14386
gene-evm.TU.Chr19.450 rna-evm.model.Chr19.450 Chr19 15797621 15801571 PREDICTED: G-protein coupled receptor GRL101 GO:0005515 K06734
gene-evm.TU.Chr19.451 rna-evm.model.Chr19.451 Chr19 15814778 15815360 uncharacterized protein nan nan
gene-evm.TU.Chr19.452 rna-evm.model.Chr19.452 Chr19 15874875 15875221 PREDICTED: Zinc finger protein 555 GO:0003676 K09191
gene-evm.TU.Chr19.455 rna-evm.model.Chr19.455 Chr19 16015719 16021500 PREDICTED: Centrosomal protein POC5 nan K16483
gene-evm.TU.Chr19.456 rna-evm.model.Chr19.456 Chr19 16063666 16097142 PREDICTED: Histidine decarboxylase GO:0006520;GO:0016831;GO:0019752;GO:0030170 K01590
gene-evm.TU.Chr19.458 rna-evm.model.Chr19.458 Chr19 16113671 16119300 PREDICTED: Melatonin receptor type 1B GO:0004930;GO:0007186;GO:0016020 K04286
gene-evm.TU.Chr19.459 rna-evm.model.Chr19.459 Chr19 16123458 16125448 PREDICTED: Cathepsin L-like proteinase GO:0006508;GO:0008234 K01365

For more detailed data, you can explore the Download section to access the full dataset.