CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.523 rna-evm.model.Chr19.523 Chr19 17706397 17708422 PREDICTED: BTB/POZ domain-containing protein 6-A GO:0005515 K10478
gene-evm.TU.Chr19.524 rna-evm.model.Chr19.524 Chr19 17717649 17719590 PREDICTED: BTB/POZ domain-containing protein 1 GO:0005515 K10478
gene-evm.TU.Chr19.525 rna-evm.model.Chr19.525 Chr19 17740933 17762573 PREDICTED: Gamma-aminobutyric acid receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05181
gene-evm.TU.Chr19.529 rna-evm.model.Chr19.529 Chr19 17818361 17820753 uncharacterized protein nan nan
gene-evm.TU.Chr19.531 rna-evm.model.Chr19.531 Chr19 17918211 17924132 uncharacterized protein nan K12420
gene-evm.TU.Chr19.536 rna-evm.model.Chr19.536 Chr19 17966823 17976292 PREDICTED: Interferon-induced protein 44-like GO:0005525 K10429
gene-evm.TU.Chr19.537 rna-evm.model.Chr19.537 Chr19 18001815 18060048 PREDICTED: Glutamate-gated chloride channel alpha GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05271
gene-evm.TU.Chr19.538 rna-evm.model.Chr19.538 Chr19 18074772 18084866 PREDICTED: mucin-22-like nan K04333
gene-evm.TU.Chr19.544 rna-evm.model.Chr19.544 Chr19 18210861 18219757 PREDICTED: Receptor-type tyrosine-protein phosphatase epsilon GO:0004725;GO:0006470 K06776
gene-evm.TU.Chr19.546 rna-evm.model.Chr19.546 Chr19 18272354 18274451 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.