CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.425 rna-evm.model.Chr19.425 Chr19 14650057 14655573 PREDICTED: N-acetylglucosamine-1-phosphotransferase subunits alpha/beta GO:0016772 K08239
gene-evm.TU.Chr19.426 rna-evm.model.Chr19.426 Chr19 14664452 14672524 PREDICTED: Zinc finger and BTB domain-containing protein 8A.1-B GO:0003676 K22402
gene-evm.TU.Chr19.427 rna-evm.model.Chr19.427 Chr19 14676693 14695705 PREDICTED: Transmembrane emp24 domain-containing protein 7 nan K20349
gene-evm.TU.Chr19.429 rna-evm.model.Chr19.429 Chr19 14723229 14732471 PREDICTED: DnaJ homolog subfamily A member 1 GO:0031072;GO:0051082 K09502
gene-evm.TU.Chr19.43 rna-evm.model.Chr19.43 Chr19 2666316 2676817 uncharacterized protein nan K16759
gene-evm.TU.Chr19.430 rna-evm.model.Chr19.430 Chr19 14734790 14741798 PREDICTED: U6 snRNA-associated Sm-like protein LSm7 nan K12626
gene-evm.TU.Chr19.431 rna-evm.model.Chr19.431 Chr19 14750381 14759077 uncharacterized protein nan K02215
gene-evm.TU.Chr19.432 rna-evm.model.Chr19.432 Chr19 14763745 14789493 PREDICTED: Endoplasmic reticulum aminopeptidase 1 GO:0006508;GO:0008237;GO:0008270 K11141
gene-evm.TU.Chr19.433 rna-evm.model.Chr19.433 Chr19 14815087 14819761 uncharacterized protein nan nan
gene-evm.TU.Chr19.434 rna-evm.model.Chr19.434 Chr19 14857134 14862291 PREDICTED: Centrosomal protein POC5 nan K16483

For more detailed data, you can explore the Download section to access the full dataset.