CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.485 rna-evm.model.Chr19.485 Chr19 16767155 16808141 PREDICTED: N-lysine methyltransferase KMT5A-A GO:0005515 K11428
gene-evm.TU.Chr19.486 rna-evm.model.Chr19.486 Chr19 16759964 16831610 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K03900
gene-evm.TU.Chr19.487 rna-evm.model.Chr19.487 Chr19 16832533 16836890 PREDICTED: Neurogenic locus notch homolog protein 2 GO:0005509 K06052
gene-evm.TU.Chr19.488 rna-evm.model.Chr19.488 Chr19 16863067 16917750 PREDICTED: NADPH oxidase 5 GO:0005509;GO:0016020;GO:0016175;GO:0016491;GO:0042554;GO:0055114 K21424
gene-evm.TU.Chr19.49 rna-evm.model.Chr19.49 Chr19 3156411 3243275 uncharacterized protein nan K23334
gene-evm.TU.Chr19.491 rna-evm.model.Chr19.491 Chr19 16939983 16940230 PREDICTED: Plasminogen nan K01315
gene-evm.TU.Chr19.493 rna-evm.model.Chr19.493 Chr19 16965923 16968690 PREDICTED: Lactadherin nan K24463
gene-evm.TU.Chr19.494_evm.TU.Chr19.495 rna-evm.model.Chr19.494_evm.model.Chr19.495 Chr19 16997510 17159588 PREDICTED: Mucin-like protein (Fragment) GO:0005509 K23342
gene-evm.TU.Chr19.496 rna-evm.model.Chr19.496 Chr19 17172706 17186676 PREDICTED: Mucin-like protein (Fragment) GO:0005509 K24431
gene-evm.TU.Chr19.497 rna-evm.model.Chr19.497 Chr19 17193303 17239058 PREDICTED: Mucin-like protein (Fragment) GO:0005509 K24431

For more detailed data, you can explore the Download section to access the full dataset.