CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.295 rna-evm.model.Chr19.295 Chr19 11753418 11754197 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan nan
gene-evm.TU.Chr19.296 rna-evm.model.Chr19.296 Chr19 11755278 11779029 PREDICTED: Kielin/chordin-like protein nan K25229
gene-evm.TU.Chr19.297 rna-evm.model.Chr19.297 Chr19 11784303 11785469 PREDICTED: Somatostatin receptor type 2 GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr19.298 rna-evm.model.Chr19.298 Chr19 11786260 11806686 PREDICTED: activating transcription factor 7-interacting protein 1-like nan K15922
gene-evm.TU.Chr19.299 rna-evm.model.Chr19.299 Chr19 11827217 11831343 uncharacterized protein GO:0005576;GO:0030414 K23637
gene-evm.TU.Chr19.3 rna-evm.model.Chr19.3 Chr19 73502 82963 PREDICTED: Calexcitin-2 GO:0005509 K15825
gene-evm.TU.Chr19.300 rna-evm.model.Chr19.300 Chr19 11832215 11846777 uncharacterized protein nan K22560
gene-evm.TU.Chr19.301 rna-evm.model.Chr19.301 Chr19 11849879 11892828 PREDICTED: Apolipoprotein(a) (Fragment) nan K01315
gene-evm.TU.Chr19.302 rna-evm.model.Chr19.302 Chr19 11895843 11907454 uncharacterized protein nan K06841
gene-evm.TU.Chr19.303 rna-evm.model.Chr19.303 Chr19 11909192 11932517 PREDICTED: Apolipoprotein(a) nan K01315

For more detailed data, you can explore the Download section to access the full dataset.