CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.270 rna-evm.model.Chr19.270 Chr19 11229920 11233687 uncharacterized protein nan K11757
gene-evm.TU.Chr19.271 rna-evm.model.Chr19.271 Chr19 11244255 11269230 PREDICTED: Neuronal acetylcholine receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr19.272 rna-evm.model.Chr19.272 Chr19 11274443 11275036 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr19.273 rna-evm.model.Chr19.273 Chr19 11275079 11276493 uncharacterized protein nan nan
gene-evm.TU.Chr19.274 rna-evm.model.Chr19.274 Chr19 11329033 11332647 uncharacterized protein nan K11021
gene-evm.TU.Chr19.275 rna-evm.model.Chr19.275 Chr19 11378399 11396460 PREDICTED: Fibropellin-1 GO:0005509 K20994
gene-evm.TU.Chr19.279 rna-evm.model.Chr19.279 Chr19 11448726 11452264 uncharacterized protein nan K11757
gene-evm.TU.Chr19.28 rna-evm.model.Chr19.28 Chr19 1739829 1741669 uncharacterized protein nan nan
gene-evm.TU.Chr19.282 rna-evm.model.Chr19.282 Chr19 11476170 11492233 PREDICTED: Neuronal acetylcholine receptor subunit alpha-10 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr19.283 rna-evm.model.Chr19.283 Chr19 11512022 11515075 PREDICTED: apolipoprotein L GO:0005576;GO:0006869;GO:0008289;GO:0042157 K14480

For more detailed data, you can explore the Download section to access the full dataset.