CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr19.32 rna-evm.model.Chr19.32 Chr19 2104887 2126939 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr19.322 rna-evm.model.Chr19.322 Chr19 12349769 12356092 uncharacterized protein nan nan
gene-evm.TU.Chr19.325 rna-evm.model.Chr19.325.1 Chr19 12385477 12425654 PREDICTED: Guanine nucleotide-binding protein G(q) subunit alpha GO:0001664;GO:0003924;GO:0007186;GO:0019001;GO:0031683 K04634
gene-evm.TU.Chr19.326 rna-evm.model.Chr19.326 Chr19 12436042 12461253 PREDICTED: Hemicentin-1 GO:0005515;GO:0008270 K04596
gene-evm.TU.Chr19.328 rna-evm.model.Chr19.328 Chr19 12475964 12477444 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr19.330 rna-evm.model.Chr19.330 Chr19 12478168 12479168 PREDICTED: nuclear RNA export factor nan nan
gene-evm.TU.Chr19.331 rna-evm.model.Chr19.331 Chr19 12479345 12482707 PREDICTED: Serendipity locus protein H-1 GO:0003676 K09191
gene-evm.TU.Chr19.332 rna-evm.model.Chr19.332 Chr19 12483940 12484599 uncharacterized protein nan K13427
gene-evm.TU.Chr19.335 rna-evm.model.Chr19.335 Chr19 12489144 12492211 uncharacterized protein nan K02583
gene-evm.TU.Chr19.336 rna-evm.model.Chr19.336 Chr19 12493027 12583155 PREDICTED: Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 nan K22544

For more detailed data, you can explore the Download section to access the full dataset.